Berkeley Drosophila Genome Project
May 10-12, 2024: There is a planned power outage for the weekened of May 10-12.
During this time the fruitfly.org and insitu.fruitfly.org servers will be
inaccessible. We plan to have the servers back up sometime on May 12. We
apologize for the inconvenience.
BDGP Resources
Download Previous Releases of the Drosophila Genomic Sequence
| Description | Last updated | Database (via http) | Compressed version (via ftp) |
|---|---|---|---|
| Release 2.5 BAC-based Complete Sequence Contigs | |||
| [Release 2.5](/sequence/assembly.html) Finished Drosophila genomic clone sequences from BDGP and Celera (may include sequence not yet in GenBank) | [an error occurred while processing this directive] | [na\_clones.dros.RELEASE2.5](/data/sequence/sequence_db/na_clones.dros.RELEASE2.5) | [na\_clones.dros.RELEASE2.5.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_clones.dros.RELEASE2.5.Z) |
| Release 2 Whole Genome Sequence | |||
| Drosophila genomic sequence from Celera & BDGP's [Release 2](/annot/release2.html) (10/2000) as chromosome arms--gaps (indicated by Ns) in sequence reflect actual length where known or 1kb where unknown | [an error occurred while processing this directive] | [na\_arms.dros.RELEASE2](/data/sequence/sequence_db/na_arms.dros.RELEASE2) | [na\_arms.dros.RELEASE2.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_arms.dros.RELEASE2.Z) |
| Nucleic acid sequence for every predicted transcript cDNA from [Release 2](/annot/release2.html) (10/2000) | [an error occurred while processing this directive] | [na\_gadfly.dros.RELEASE2](/data/sequence/sequence_db/na_gadfly.dros.RELEASE2) | [na\_gadfly.dros.RELEASE2.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gadfly.dros.RELEASE2.Z) |
| Nucleic acid sequence for coding region (CDS) of every predicted transcript from [Release 2](/annot/release2.html) (10/2000) | [an error occurred while processing this directive] | [na\_gadflyCDS.dros.RELEASE2](/data/sequence/sequence_db/na_gadflyCDS.dros.RELEASE2) | [na\_gadflyCDS.dros.RELEASE2.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gadflyCDS.dros.RELEASE2.Z) |
| Translated polypeptide for every predicted transcript from [Release 2](/annot/release2.html) (10/2000) | [an error occurred while processing this directive] | [aa\_gadfly.dros.RELEASE2](/data/sequence/sequence_db/aa_gadfly.dros.RELEASE2) | [aa\_gadfly.dros.RELEASE2.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_gadfly.dros.RELEASE2.Z) |
| Nucleic acid sequence for genomic region (including 500bp upstream and downstream) of every predicted transcription unit from [Release 2](/annot/release2.html) (10/2000) | [an error occurred while processing this directive] | [na\_gadflyregion.dros.RELEASE2](/data/sequence/sequence_db/na_gadflyregion.dros.RELEASE2) | [na\_gadflyregion.dros.RELEASE2.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gadflyregion.dros.RELEASE2.Z) |
| The Celera/BDGP whole-genome shotgun sequence from [Release 2](/annot/release2.html) (10/2000), broken into 350Kb pieces | [an error occurred while processing this directive] | [na\_geno.dros.RELEASE2](/data/sequence/sequence_db/na_geno.dros.RELEASE2) | [na\_geno.dros.RELEASE2.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_geno.dros.RELEASE2.Z) |
| Release 1 Whole Genome Sequence | |||
| Drosophila genomic sequence from Celera & BDGP's Release 1 (3/2000) as chromosome arms--gaps (indicated by Ns) in sequence reflect actual length where known or 1kb where unknown | [an error occurred while processing this directive] | [na\_arms.dros.RELEASE1](/data/sequence/sequence_db/na_arms.dros.RELEASE1) | [na\_arms.dros.RELEASE1.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_arms.dros.RELEASE1.Z) |
| Comprehensive set of scaffolds from Celera & BDGP (unordered and unoriented) from Release 1 (3/2000)--including heterochromatic scaffolds | 25-Apr-2000 | [na\_scaffolds.dros](/data/sequence/sequence_db/na_scaffolds.dros) | [na\_scaffolds.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_scaffolds.dros.Z) |
| Nucleic acid sequence for every predicted transcript cDNA from Release 1 (3/2000) | [an error occurred while processing this directive] | [na\_gadfly.dros.RELEASE1](/data/sequence/sequence_db/na_gadfly.dros.RELEASE1) | [na\_gadfly.dros.RELEASE1.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gadfly.dros.RELEASE1.Z) |
| Nucleic acid sequence for coding region (CDS) of every predicted transcript from Release 1 (3/2000) | [an error occurred while processing this directive] | [na\_gadflyCDS.dros.RELEASE1](/data/sequence/sequence_db/na_gadflyCDS.dros.RELEASE1) | [na\_gadflyCDS.dros.RELEASE1.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gadflyCDS.dros.RELEASE1.Z) |
| Translated polypeptide for every predicted transcript from Release 1 (3/2000) | [an error occurred while processing this directive] | [aa\_gadfly.dros.RELEASE1](/data/sequence/sequence_db/aa_gadfly.dros.RELEASE1) | [aa\_gadfly.dros.RELEASE1.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/aa_gadfly.dros.RELEASE1.Z) |
| Nucleic acid sequence for genomic region (including 500bp upstream and downstream) of every predicted transcription unit from Release 1 (3/2000) | [an error occurred while processing this directive] | [na\_gadflyregion.dros.RELEASE1](/data/sequence/sequence_db/na_gadflyregion.dros.RELEASE1) | [na\_gadflyregion.dros.RELEASE1.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_gadflyregion.dros.RELEASE1.Z) |
| The Celera/BDGP whole-genome shotgun sequence from Release 1 (3/2000), broken into 350Kb pieces | [an error occurred while processing this directive] | [na\_geno.dros.RELEASE1](/data/sequence/sequence_db/na_geno.dros.RELEASE1) | [na\_geno.dros.RELEASE1.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_geno.dros.RELEASE1.Z) |
| BDGP/EDGP Genomic Clone Sequence | |||
| P1, BAC, and cosmid sequences from the BDGP & EDGP that have been submitted to GenBank (does not include whole genome shotgun sequence, but includes finished [Release 2.9](/annot/release2.html) sequence) | 20-Mar-2003 | [na\_geno\_clones.dros](/data/sequence/sequence_db/na_geno_clones.dros) | [na\_geno\_clones.dros.Z](ftp://ftp.fruitfly.org/pub/genomic/fasta/na_geno_clones.dros.Z) |